The current version of the documentation has been moved to http://wiki.geneontology.org/index.php/Ontology_Editing_Guide

GO Ontology Editors Guide¶

This is a guide for editors of the Gene Ontology. This guide is subject to revision.

https://travis-ci.org/geneontology/go-ontology.svg?branch=master

Contents:

  • Initial Setup
    • Installing Protege
    • ID Ranges
    • Setting ID ranges in Protege
  • Configuration
    • Configuring New Entities Metadata
    • Configuring User details
  • Installing and Using git
    • Installing git
    • Cloning the go-ontology repository from GitHub
    • Editing the .profile (or .bashrc) file to indicate the branch you are working on
  • Daily Workflow
    • Updating the local copy of the ontology with ‘git pull’
    • Creating a New Working Branch with ‘git checkout’
    • Continuing work on an existing Working Branch
    • Loading, navigating and saving the Ontology in Protégé
    • Committing, pushing and merging your changes to the repository
  • Creating a New Ontology Term
  • Creating Regulation Terms
  • Deleting Asserted Subclasses
  • Obsoleting an Existing Ontology Term
  • Merging Ontology Terms
  • Term Comments
    • Adding Comments to Terms
    • Do Not Annotate
    • Do Not Manually Annotate
  • Adding a term to a GO Subset (Slim)
  • Adding a new GO Subset (Slim)
  • Adding taxon restrictions
  • Adding Terms to the Import Files

GO Ontology

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Contents:

  • Initial Setup
  • Configuration
  • Installing and Using git
  • Daily Workflow
  • Creating a New Ontology Term
  • Creating Regulation Terms
  • Deleting Asserted Subclasses
  • Obsoleting an Existing Ontology Term
  • Merging Ontology Terms
  • Term Comments
  • Adding a term to a GO Subset (Slim)
  • Adding a new GO Subset (Slim)
  • Adding taxon restrictions
  • Adding Terms to the Import Files

Related Topics

  • Documentation overview
    • Next: Initial Setup

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